Cellular Respiration - Harvesting Chemical Energy

Cellular Respiration:Harvesting Chemical Energy Overview: Life Is Work  To perform their many tasks, living cells require energy from outside sources.   Energy enters most ecosystems as sunlight and leaves as heat. In contrast, the chemical elements essential for life are recycled.  Photosynthesis generates oxygen and organic molecules that the mitochondria of eukaryotes (including plants and algae) use as fuel for cellular respiration.  Cells harvest the chemical energy stored in organic molecules and use it to regenerate ATP, the molecule that drives most cellular work.  Respiration has three key pathways: glycolysis, the citric acid cycle, and oxidative phosphorylation. Concept 9.1 Catabolic pathways yield energy by oxidizing organic fuels.   Catabolic metabolic pathways release the energy stored in complex organic molecules. Electron transfer plays a major role in these pathways.  The arrangement of atoms of organic molecules represents potential energy.  Enzymes catalyze the systematic degradation of organic molecules that are rich in energy to simpler waste products that have less energy.  Some of the released energy is used to do work; the rest is dissipated as heat.  One type of catabolic process, fermentation, leads to the partial degradation of sugars without the use of oxygen.  A more efficient and widespread catabolic process, aerobic respiration, consumes oxygen as a reactant to complete the breakdown of a variety of organic molecules. o Most eukaryotic and many prokaryotic organisms can carry out aerobic respiration. o o Some prokaryotes use compounds other than oxygen as reactants in a similar process called anaerobic respiration. Although cellular respiration technically includes both aerobic and anaerobic processes, the term is commonly used to refer only to the aerobic process.  Aerobic respiration is similar in broad principle to the combustion of gasoline in an automobile engine after oxygen is mixed with hydrocarbon fuel. o Food is the fuel for respiration. The exhaust is carbon dioxide and water.  The overall catabolic process is: organic compounds + O 2  CO2 + H2O + energy (ATP + heat).  Carbohydrates, fats, and proteins can all be used as the fuel, but it is most useful to consider glucose: C6H12O6 + 6O2  6CO2 + 6H2O + energy (ATP + heat)  The catabolism of glucose is exergonic, with G = −686 kcal per mole of glucose. Some of this energy is used to produce ATP, which can perform cellular work.  Redox reactions release energy when electrons move closer to electronegative atoms.  Catabolic pathways transfer the electrons stored in food molecules, releasing energy that is used to synthesize ATP.  Reactions that result in the transfer of one or more electrons (e−) from one reactant to another are oxidation-reduction reactions, or redox reactions. o The loss of electrons from a substance is called oxidation. o The addition of electrons to another substance is called reduction. o Adding electrons is called reduction because negatively charged electrons added to an atom reduce the amount of positive charge of that atom.  The formation of table salt from sodium and chloride, Na + Cl  Na+ + Cl−,is a redox reaction. o Sodium is oxidized, and chlorine is reduced (its charge drops from 0 to −1).  X, the electron donor, is the reducing agent and reduces Y by donating an electron to it. o Y, the electron recipient, is the oxidizing agent and oxidizes X by removing its electron.  Redox reactions require both a donor and an acceptor.  Redox reactions also occur when the transfer of electrons is not complete but involves a change in the degree of electron sharing in covalent bonds.   In the combustion of methane to form water and carbon dioxide, the nonpolar covalent bonds of methane (C—H) and oxygen (O=O) are converted to polar covalent bonds (C=O and O—H). When methane reacts with oxygen to form carbon dioxide, electrons end up farther away from the carbon atom and closer to their new covalent partners, the oxygen atoms, which are very electronegative. o In effect, the carbon atom has partially “lost” its shared electrons. Thus, methane has been oxidized.   The two atoms of the oxygen molecule (O2) share their electrons equally. When oxygen reacts with the hydrogen from methane to form water, the electrons of the covalent bonds are drawn closer to the oxygen. o In effect, each oxygen atom has partially “gained” electrons, and so the oxygen molecule has been reduced. o Oxygen is very electronegative and is one of the most potent of all oxidizing agents.  Energy must be added to pull an electron away from an atom.  The more electronegative the atom, the more energy is required to take an electron away from it.  An electron loses potential energy when it shifts from a less electronegative atom toward a more electronegative one.  A redox reaction that relocates electrons closer to oxygen, such as the burning of methane, releases chemical energy that can do work. Organic fuel molecules are oxidized during cellular respiration.          Respiration, the oxidation of glucose and other molecules in food, is a redox process. In a series of reactions, glucose is oxidized and oxygen is reduced. The electrons lose potential energy along the way, and energy is released. Organic molecules that contain an abundance of hydrogen are excellent fuels. The bonds of these molecules are a source of “hilltop” electrons, whose energy may be released as the electrons “fall” down an energy gradient when they are transferred to oxygen. As hydrogen is transferred from glucose to oxygen, the energy state of the electron changes. In respiration, the oxidation of glucose transfers electrons to a lower energy state, releasing energy that becomes available for ATP synthesis. The main energy foods, carbohydrates and fats, are reservoirs of electrons associated with hydrogen. These molecules are stable because of the barrier of activation energy. o Without this barrier, a food molecule like glucose would combine almost instantaneously with O2. o o If activation energy is supplied by igniting glucose, it burns in air, releasing 686 kcal (2,870 kJ) of heat per mole of glucose (about 180 g). The “fall” of electrons during respiration is stepwise, via NAD + and an electron transport chain.  Cellular respiration does not oxidize glucose in a single step that transfers all the hydrogen in the fuel to oxygen at one time.  Rather, glucose and other fuels are broken down in a series of steps, each catalyzed by a specific enzyme. At key steps, electrons are stripped from the glucose. In many oxidation reactions, the electron is transferred with a proton, as a hydrogen atom.      The hydrogen atoms are not transferred directly to oxygen but are passed first to a coenzyme called NAD+ (nicotinamide adenine dinucleotide). As an electron acceptor, NAD+ functions as an oxidizing agent during respiration. How does NAD+ trap electrons from glucose? o Dehydrogenase enzymes strip two hydrogen atoms from the substrate (glucose), thus oxidizing it. o The enzyme passes two electrons and one proton to NAD+. o The other proton is released as H+ to the surrounding solution. The electrons carried by NADH lose very little of their potential energy in this process.  Each NADH molecule formed during respiration represents stored energy. This energy is tapped to synthesize ATP as electrons “fall” down an energy gradient from NADH to oxygen.  How are electrons extracted from glucose and stored in NADH finally transferred to oxygen? Unlike the explosive release of heat energy that occurs when H2 and O2 are combined (with a spark for activation energy), cellular respiration uses an electron transport chain to break the fall of electrons to O2 into several steps.   The electron transport chain consists of several molecules (primarily proteins) built into the inner membrane of a mitochondrion of eukaryotic cells and the plasma membrane of aerobically respiring prokaryotes.  Electrons released from food are shuttled by NADH to the “top” higherenergy end of the chain.  At the “bottom” lower-energy end, oxygen captures the electrons along with H+ to form water.  Electrons are passed to increasingly electronegative molecules in the chain until they reduce oxygen, the most electronegative receptor.  Each “downhill” carrier is more electronegative than, and thus capable of oxidizing, its “uphill” neighbor, with oxygen at the bottom of the chain.  The electrons removed from glucose by NAD+ fall down an energy gradient in the electron transport chain to a far more stable location in the electronegative oxygen atom.  In summary, during cellular respiration, most electrons travel the following “downhill” route: glucose  NADH  electron transport chain  oxygen. The stages of cellular respiration: a preview.  Respiration occurs in three metabolic stages: glycolysis, the citric acid cycle, and the electron transport chain and oxidative phosphorylation.  Glycolysis occurs in the cytosol. It begins catabolism by breaking glucose into two molecules of pyruvate.  The citric acid cycle occurs in the mitochondrial matrix of eukaryotic cells or in the cytoplasm of prokaryotes. It completes the breakdown of glucose by oxidizing a derivative of pyruvate to carbon dioxide.  Several steps in glycolysis and the citric acid cycle are redox reactions in which dehydrogenase enzymes transfer electrons from substrates to NAD+, forming NADH.  In the third stage of respiration, the electron transport chain accepts electrons from the breakdown products of the first two stages (most often via NADH). In the electron transport chain, the electrons move from molecule to molecule until they combine with molecular oxygen and hydrogen ions to form water. As the electrons are passed along the chain, the energy released at each step in the chain is stored in a form the mitochondrion (or prokaryotic cell) can use to make ATP.    This mode of ATP synthesis is called oxidative phosphorylation because it is powered by the redox reactions of the electron transport chain.  In eukaryotic cells, the inner membrane of the mitochondrion is the site of electron transport and chemiosmosis, the processes that together constitute oxidative phosphorylation. In prokaryotes, these processes take place in the plasma membrane.   Oxidative phosphorylation produces almost 90% of the ATP generated by respiration.  Some ATP is also formed directly during glycolysis and the citric acid cycle by substrate-level phosphorylation, in which an enzyme transfers a phosphate group from an organic substrate molecule to ADP, forming ATP.  For each molecule of glucose degraded to carbon dioxide and water by respiration, the cell makes as many as 38 ATP, each with 7.3 kcal/mol of free energy.  Respiration uses the small steps in the respiratory pathway to break the large denomination of energy contained in glucose into the small change of ATP. o The quantity of energy in ATP is more appropriate for the energy level of work required in the cell. More Details: Glycolysis harvests chemical energy by oxidizing glucose to pyruvate.  During glycolysis, glucose, a six-carbon sugar, is split into two threecarbon sugars.  These smaller sugars are then oxidized and rearranged to form two molecules of pyruvate, the ionized form of pyruvic acid.  Each of the ten steps in glycolysis is catalyzed by a specific enzyme.  These steps can be divided into two phases. 1. In the energy investment phase, the cell spends ATP. 2. In the energy payoff phase, this investment is repaid with interest. ATP is produced by substrate-level phosphorylation, and NAD+ is reduced to NADH by electrons released by the oxidation of glucose.  The net yield from glycolysis is 2 ATP and 2 NADH per glucose. o No CO2 is produced during glycolysis.  Glycolysis can occur whether or not O2 is present.  Concept 9.3 The citric acid cycle completes the energy-yielding oxidation of organic molecules.  More than three-quarters of the original energy in glucose is still present in the two molecules of pyruvate.  If molecular oxygen is present in eukaryotic cells, pyruvate enters the mitochondrion, where enzymes of the citric acid cycle complete the oxidation of the organic fuel to carbon dioxide. o In prokaryotic cells, this process occurs in the cytoplasm.  After pyruvate enters the mitochondrion via active transport, it is converted to a compound called acetyl coenzyme A, or acetyl CoA.  This step, the junction between glycolysis and the citric acid cycle, is accomplished by a multienzyme complex that catalyzes three reactions. 1 . A carboxyl group is removed as CO2. The carbon dioxide is fully oxidized and thus has little chemical energy. 2 . The remaining two-carbon fragment is oxidized to form acetate. An enzyme transfers the pair of electrons to NAD + to form NADH. 3 . Acetate combines with coenzyme A to form the very reactive molecule acetyl CoA. o In other words, the reaction of acetyl CoA to yield lower-energy products is highly exergonic.  Acetyl CoA is now ready to feed its acetyl group into the citric acid cycle for further oxidation.  The citric acid cycle is also called the tricarboxylic acid cycle or the Krebs cycle. o The latter name honors Hans Krebs, who was largely responsible for elucidating the cycle’s pathways in the 1930s.   The citric acid cycle oxidizes organic fuel derived from pyruvate. Three CO2 molecules are released, including the one released during the conversion of pyruvate to acetyl CoA.  Most of the chemical energy is transferred to NAD+ and a related electron carrier, the coenzyme FAD, during the redox reactions.  The reduced coenzymes, NADH and FADH2, transfer high-energy electrons to the electron transport chain.  The citric acid cycle has eight steps, each catalyzed by a specific enzyme. o The acetyl group of acetyl CoA joins the cycle by combining with the compound oxaloacetate, forming citrate. o The next seven steps decompose the citrate back to oxaloacetate. o It is the regeneration of oxaloacetate that makes this process a cycle.  For each acetyl group that enters the cycle, 3 NAD+ are reduced to NADH. Then FAD accepts 2 electrons and 2 protons to become FADH 2.    Most of the ATP produced by respiration results from oxidative phosphorylation, as the NADH and FADH2 produced by the citric acid cycle relay the electrons extracted from food to the electron transport chain. This process supplies the necessary energy for the phosphorylation of ADP to ATP. Concept 9.4 During oxidative phosphorylation, chemiosmosis couples electron transport to ATP synthesis. Two ATP are produced during glycolysis, and 2 ATP are produced during the citric acid cycle.   NADH and FADH2 account for most of the energy extracted from glucose. These reduced coenzymes link glycolysis and the citric acid cycle to oxidative phosphorylation, which uses energy released by the electron transport chain to power ATP synthesis. The inner mitochondrial membrane couples electron transport to ATP synthesis.  The electron transport chain is a collection of molecules embedded in the cristae, the folded inner membrane of the mitochondrion. o In prokaryotes, the electron transport chain is located in the plasma membrane.   The folding of the inner membrane to form cristae increases its surface area, providing space for thousands of copies of the chain in each mitochondrion. Most components of the chain are proteins that exist in multiprotein complexes.  Electrons drop in free energy as they pass down the electron transport chain.  During electron transport along the chain, electron carriers alternate between reduced and oxidized states as they accept and donate electrons. o Each component of the chain becomes reduced when it accepts electrons from its “uphill” neighbor, which is less electronegative. o It then returns to its oxidized form as it passes electrons to its more electronegative “downhill” neighbor.  Electrons carried by NADH are transferred to the first molecule in the electron transport chain Most of the electron carriers are proteins called cytochromes. o The last cytochrome of the chain, cyt a3, passes its electrons to oxygen, which is very electronegative. Each oxygen atom also picks up a pair of hydrogen ions from the aqueous solution to form water.   The electron transport chain generates no ATP directly. Its function is to break the large free-energy drop from food to oxygen into a series of smaller steps that release energy in manageable amounts. Chemiosmosis couples electron transport and energy release to ATP synthesis.    A protein complex in the cristae, ATP synthase, actually makes ATP from ADP and Pi. ATP synthase uses the energy of an existing ion gradient to power ATP synthesis.  The power source for the ATP synthase is a difference in the concentrations of H+ on opposite sides of the inner mitochondrial membrane..  This process, in which energy stored in the form of a hydrogen ion gradient across a membrane is used to drive cellular work such as the synthesis of ATP, is called chemiosmosis. o Here, osmosis refers to the flow of H+ across a membrane.  From studying the structure of ATP synthase, scientists have learned how the flow of H+ through this large enzyme powers ATP generation.  ATP synthase is a multisubunit complex with four main parts, each made up of multiple polypeptides.  Protons move one by one into binding sites on one of the parts (the rotor), causing it to spin in a way that catalyzes ATP production from ADP and inorganic phosphate. Biochemists assumed that the same rotational mechanism was responsible for ATP synthesis, but they lacked experimental evidence. In 2004, nanotechnology techniques (involving control of matter on the molecular scale) were used to demonstrate that the direction of rotation of one part of the complex in relation to another is responsible for either ATP synthesis or ATP hydrolysis by this enzyme. o      The ATP synthase molecules are the only place where H+ can diffuse back to the matrix. The exergonic flow of H+ is used by the enzyme to generate ATP. This coupling of the redox reactions of the electron transport chain to ATP synthesis is an example of chemiosmosis. How does the electron transport chain pump protons? o Certain members of the electron transport chain accept and release H+ along with electrons. o At certain steps along the chain, electron transfers cause H+ to be taken up and released into the surrounding solution. The H+ gradient that results is the proton-motive force, a gradient with the capacity to do work. o The force drives H+ back across the membrane through the specific H+ channels provided by ATP synthases.  Chemiosmosis is an energy-coupling mechanism that uses energy stored in the form of an H+ gradient across a membrane to drive cellular work.  Here is an accounting of ATP production by cellular respiration.  During cellular respiration, most energy flows as follows: glucose  NADH  electron transport chain  proton-motive force  ATP.  Let’s consider the products generated when cellular respiration oxidizes a molecule of glucose to six molecules of CO 2.  Four ATP molecules are produced by substrate-level phosphorylation during glycolysis and the citric acid cycle.  Many more ATP molecules are generated by oxidative phosphorylation (36-38).  How efficient is respiration in generating ATP? About 40% o Efficiency of respiration is 7.3 kcal/mol times 38 ATP/glucose divided by 686 kcal/mol glucose, which equals 0.4, or 40%. o Approximately 60% of the energy from glucose is lost as heat. o Some of that heat is used to maintain our high body temperature (37°C).  Cellular respiration is remarkably efficient in energy conversion. o For example, the most efficient automobile converts only about 25% of the energy stored in gasoline to energy that moves the car. Concept 9.5 Fermentation and anaerobic respiration enable some cells to produce ATP without the use of oxygen.  Without electronegative oxygen to pull electrons down the transport chain, oxidative phosphorylation ceases.  However, there are two general mechanisms by which certain cells can oxidize organic fuel and generate ATP without the use of oxygen: fermentation and anaerobic respiration. ( in class we only discussed fermentation and did not talk about anaerobic respiration) o An electron transport chain is present in aerobic respiration but not in fermentation.  Anaerobic respiration takes place in organisms that have an electron transport chain but do not use oxygen as a final electron acceptor at the end of the chain. o Some “sulfate-reducing” marine bacteria, for instance, use the electronegative sulfate ion (SO42-) at the end of their respiratory chain but H2S (hydrogen sulfide) is produced as a by-product rather than H2O (water).  Fermentation provides a mechanism by which some cells can oxidize organic fuel and generate ATP without the use of oxygen or any electron transport chain (that is, without cellular respiration). o Glycolysis is exergonic and produces 2 ATP (net) by substrate-level phosphorylation ( using enzymes only).  Fermentation can generate 2 ATP from glucose by substrate-level phosphorylation as long as there is a supply of NAD+ to accept electrons during the oxidation step of glycolysis. o Fermentation pathways recycle NAD+ by transferring electrons from NADH to pyruvate or derivatives of pyruvate.  In alcohol fermentation, pyruvate is converted to ethanol in two steps. 1. Pyruvate is converted to a two-carbon compound by the removal of CO2 and then is reduced by NADH to ethanol. o Alcohol fermentation by yeast is used in brewing, baking, and winemaking.  During lactic acid fermentation, pyruvate is reduced directly by NADH to form lactate (the ionized form of lactic acid) without the release of CO2. o Lactic acid fermentation by some fungi and bacteria is used to make cheese and yogurt. Human muscle cells switch from aerobic respiration to lactic acid fermentation to generate ATP when O2 is scarce. This may occur in the early stages of strenuous exercise. o The waste product, lactate, was previously thought to cause muscle fatigue and pain, but recent research suggests instead that increased levels of potassium ions (K+) may be to blame. o Excess lactate is gradually carried away by the blood to the liver, where it is converted back to pyruvate by liver cells. Fermentation and cellular respiration are compared.   Fermentation and cellular respiration are anaerobic and aerobic alternatives, respectively, for producing ATP from sugars. o o  Both use glycolysis to oxidize sugars to pyruvate with a net production of 2 ATP by substrate-level phosphorylation. Both use NAD+ as an oxidizing agent to accept electrons from food during glycolysis. The two processes differ in their mechanism for oxidizing NADH to NAD+, which is required to sustain glycolysis. o In fermentation, the electrons of NADH are passed to an organic molecule such as pyruvate (lactic acid fermentation) or acetaldehyde (alcohol fermentation), in order to regenerate NAD+. o In cellular respiration, the electrons of NADH are ultimately passed to O2, generating ATP by oxidative phosphorylation. o Under aerobic respiration, a molecule of glucose yields 38 ATP, but the same molecule of glucose yields only 2 ATP under anaerobic respiration. Organisms vary in the pathways available to them to break down sugars.  Obligate anaerobes carry out only fermentation or anaerobic respiration and cannot survive in the presence of oxygen.  Yeast and many bacteria are facultative anaerobes that can survive using either fermentation or respiration. o At a cellular level, human muscle cells can behave as facultative anaerobes.  For facultative anaerobes, pyruvate is a fork in the metabolic road that leads to two alternative routes. o Under aerobic conditions, pyruvate is converted to acetyl CoA and oxidation continues in the citric acid cycle. o Under anaerobic conditions, pyruvate serves as an electron acceptor to recycle NAD+. The role of glycolysis in both fermentation and respiration has an evolutionary basis.   Ancient prokaryotes used glycolysis to make ATP long before oxygen was present in Earth’s atmosphere.  The oldest bacterial fossils are more than 3.5 billion years old, appearing long before appreciable quantities of O2 accumulated in the atmosphere about 2.7 billion years ago. o Cyanobacteria produced this O2 as a by-product of photosynthesis.  The first prokaryotes may have generated ATP exclusively from glycolysis, which does not require oxygen.  The fact that glycolysis is a universal metabolic pathway and occurs in the cytosol without membrane-enclosed organelles suggests that this pathway evolved very early in the history of life on Earth. Concept 9.6 Glycolysis and the citric acid cycle connect to many other metabolic pathways. A variety of organic molecules can be used to make ATP.  Glycolysis can accept a wide range of carbohydrates for catabolism. o Polysaccharides like starch or glycogen can be hydrolyzed to glucose monomers that enter glycolysis and the citric acid cycle.  The other two major fuels, proteins and fats, can also enter the respiratory pathways used by carbohydrates.  Proteins must first be digested to individual amino acids. o The nitrogenous waste is excreted as ammonia, urea, or another waste product. o The carbon skeletons are modified by enzymes and enter as intermediaries into glycolysis or the citric acid cycle, depending on their structure.  Catabolism can also harvest energy stored in fats obtained from food or from storage cells in the body.  Fats must be digested to glycerol and fatty acids. o Glycerol can be converted to glyceraldehyde phosphate, an intermediate of glycolysis.  The rich energy of fatty acids is accessed as fatty acids are split into twocarbon fragments. These molecules enter the citric acid cycle as acetyl CoA.   A gram of fat oxidized by respiration generates twice as much ATP as a gram of carbohydrate. The metabolic pathways of respiration also play a role in anabolic pathways of the cell.  In addition to calories, food must provide the carbon skeletons that cells require to make their own molecules.  Some organic monomers obtained from digestion can be used directly.  Intermediaries in glycolysis and the citric acid cycle can be diverted to anabolic pathways as precursors from which the cell can synthesize the molecules it requires. o For example, a human cell can synthesize about half the 20 different amino acids by modifying compounds from the citric acid cycle. The rest are “essential amino acids” that must be obtained in the diet. o Glucose can be synthesized from pyruvate; fatty acids can be synthesized from acetyl CoA.  Glycolysis and the citric acid cycle function as metabolic interchanges that enable cells to convert one kind of molecule to another as needed. o For example, excess carbohydrates and proteins can be converted to fats through intermediaries of glycolysis and the citric acid cycle. o If we eat more food than we need, we store fat even if our diet is fatfree.  Metabolism is remarkably versatile and adaptable. Feedback mechanisms control cellular respiration.   Basic principles of supply and demand regulate the metabolic economy. The rate of catabolism is regulated, typically by the level of ATP in the cell. o If ATP levels drop, catabolism speeds up to produce more ATP. o When there is plenty of ATP to meet demand, respiration slows down, sparing valuable organic molecules for other functions.  Control of catabolism is based mainly on regulating the activity of enzymes at strategic points in the catabolic pathway.  Cells are thrifty, expedient, and responsive in their metabolism.  Cellular respiration functions in the broad context of energy flow and chemical cycling in ecosystems.  The energy that keeps us alive is released, not produced, by cellular respiration.